Fields marked with (
*
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Client Details:
Client Name:
*
E-mail:
*
Organization:
*
Contact No.:
*
Address:
*
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1000
)
Project Details:
Source of Sample/ Organism:
*
Scientific Name:
Number of samples:
*
Details of sample treatment and brief experimental plan:
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1000
)
Type of Sample:
*
Tissue
DNA
Application:
*
Genotyping by Sequencing (RAD Technology) / GBS
Genome Wide SNP genotyping
Genome Information:
Genome available
Genome size (Specify)
Technology:
*
RAD Technology / GBS on HiSeq 2000:
Restriction Enzyme
ApeK I or
Pst I or
Not I or
Sbf I or
BamH I
Other please specify:
Data type
Paired-end
Single-end
Data
1 million read tags per sample
2 million read tags per sample
3 million read tags per sample
Other please specify:
iScan: Ready Bead Chips
Maize SNP50 Bead chip
Tomato SNP
Potato SNP
Bovine HD SNP50 Bead Chip
Bovine HD 777 Bead chip
HumanOmni2.5-8 SNP Assay
HumanOmni5Exome Assay
Human Cardio-Metabo DNA Analysis
Custom SNP Assay:
Golden gate assay on iScan
Infinium assay on iScan
iPLEX assay on Sequenom MassARRAY
SNP details (rsID)
Sequence information(fasta format)
No of SNPs
Note: rsID details & sequence
information to be submitted
in doc/excel/txt file.
Bioinformatics deliverables:
SNP Genotyping
*
Raw data files
SNPs list in CSV format
Advanced services: (optional on additional payment)
*
Cluster analysis
Linkage disequilibrium/analysis
Association study
Minor allele frequency
Genotyping by sequencing (RAD technology)/GBS: (parent & progeny data)
*
List of identified loci and SNPs in excel sheet
List of haplotypes in excel sheet
LD information
Marker quality statistics
Construction of linkage map
Population haplotype frequencies
Following criteria to assess the quality of RAD markers for Genetic linkage map construction will be provided:
*
Total number of loci detected
The percentage of polymorphic loci
Segregation distortion between maps in equivalent position
For any specific analysis, kindly mention below:
(Maximum no. of chars left :
1000
)
Estimated Budget:
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1000
)
Remarks:
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1000
)